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August 2022 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak
The new case of Ebola Virus Disease in Beni is genetically linked to the 2018-2020 Nord Kivu/Ituri EVD outbreak and does not represent a new spillover event.** Context On Monday, August 15, 2022, the...
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First-ever outbreak of Marburg virus disease declared in Ghana, 2022
Joseph Humphrey Kofi Bonney1, Terrel Sanders3, Patience Adams1, Bright Adu1, Ivy Asantewaa Asante1, Evelyn Yayra Bonney1, Deborah Pratt1, Bright Agbodzi1,3, Selassie Kumordjie1,3, Clara Yeboah1,3,...
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Electron microscopy and a sequence-independent, single-primer amplification...
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Nicola Fletcher 1,2*,†, Gabriel Gonzalez 3,4†, Luke...
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Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a...
Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages Introduction As reported by the United States (US)...
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Preliminary Results from two novel “ARTIC-style” amplicon based sequencing...
Preliminary Results from two novel “ARTIC-style” amplicon based sequencing approaches for RSV A and RSV B Daniel M Maloney1,2*; Goncalo Fernandes1*; Rebecca Dewar1; Aine O’Toole2; Chenge Mphanga3;...
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Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022...
Introduction The Ministry of Health, Uganda declared an outbreak of the Sudan Ebola Virus on 20th September 2022 after the virus was identified in an individual from Mubende district by the Uganda...
View ArticleWastewater samples CANNOT be used for genome assembly
Title: Wastewater samples CANNOT be used for genome assembly Author: Alejandro Gener, PhD AIDS Editorial Board, Los Angeles, California, USA Correspondence to: Dr. Alejandro Gener...
View ArticleAbout the Other Pathogens category
(Replace this first paragraph with a brief description of your new category. This guidance will appear in the category selection area, so try to keep it below 200 characters.) Use the following...
View ArticleFirst emergence of Marburg virus in Equatorial Guinea, 2023
On February 7th, 2023, an alert was given by the Ministry of Health in the district of Kie Ntem province, in eastern Equatorial Guinea. Several patients presented with symptoms suggestive of...
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Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages Ryan Hisner1, Federico Gueli2, Thomas P. Peacock3* 1Independent Researcher, USA 2Independent Researcher, Italy 3Department of...
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Chikungunya in Paraguay during the first country-wide outbreak: new clade of...
Cardozo, Fátima1*; Rojas, Alejandra1*; Marquez, Sully2; Carvajal; Mateo2; Morel, Roque1; Bernal, Cynthia1; Galeano, María Eugenia1; Valenzuela, Adriana1; Waggoner, Jesse J3; Cárdenas, Paul2; Martínez,...
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Methods for molecular transmission cluster detection
Sarah Nadeau Visiting Postdoc, Fred Hutchinson Cancer Research Center sarahnadeau266@gmail.com This is a write-up I put together during a two-month visit to Erick Matsen’s group. Many thanks to Erick...
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Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2
Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Shing H. Zhan1, Anastasia Ignatieva2,3,*, Yan Wong1,*, Katherine Eaton4, Benjamin Jeffery1, Duncan S. Palmer1, Carmen L. Murall4,...
View ArticleNIH Postdoctoral Fellowship in Virus Evolution and Spillover
National Center for Biotechnology Information National Library of Medicine National Institutes of Health Postdoctoral Fellowship in Virus Evolution and Spillover The post-doctoral scholar will study...
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Clinical Bioinformatician, National Virus Reference Laboratory job with
THEunijobs – 26 Jun 23 Clinical Bioinformatician, National Virus Reference Laboratory job with... Applications are invited for a temporary post of a Clinical Bioinformatician x2 within UCD National...
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Vibrio Cholerae Genomics
Genomic analysis of selected Vibrio cholerae isolates from the 2023 Cholera outbreak in Zambia: A use-case for integration of whole-genome sequencing in cholera outbreak response Background Vibrio...
View ArticlePostdoc in Genomic Epidemiology and Bioinformatics of RNA Viruses
The College of Health Solutions (CHS) at Arizona State University (ASU) is seeking to fill a postdoc vacancy in genomic epidemiology and bioinformatics of RNA viruses. The candidate will work in the...
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NIAID Data Ecosystem Discovery Portal
NIAID Data Ecosystem Discovery Portal Emily Haag, Candice Czech, Ginger Tsueng, Nichollette Acosta, Jason Lin, Dylan Welzel, Everaldo Rodolpho, Chunlei Wu, Andrew I. Su, Laura D. Hughes, Wilbert Van...
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Chikungunya virus Genomic characterization during an outbreak in Kedougou,...
Preprint_CHIK_NGS_KDG_2023.pdf (276.4 KB) Idrissa Dieng1*, Bacary Djilocalisse Sadio1*, Alioune Gaye2, Samba Niang Sagne3, Marie Henriette Dior Ndione1, Mouhamed Kane1, Mamadou Korka Diallo3, Bocar...
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First outbreak of Dengue virus fever in Chad, 2023
On August 15th, 2023, the Chad Ministry of Public Health and Prevention has declared an outbreak of dengue virus (DENV) in the health district of Abéché, Ouaddaï province in eastern Chad [1]. As...
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Emergence of a novel reassortant Oropouche virus drives persistent outbreaks...
Felipe Gomes Naveca1,2 Tatiana Amaral Pires de Almeida1,3, Victor Souza1, Valdinete Nascimento1, Dejanane Silva1, Fernanda Nascimento1, Matilde Mejía1, Yasmin Silva de Oliveira1, Luisa Rocha4, Natana...
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Novel Clade I genome sequences from the ongoing mpox virus outbreak of...
The ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo, is associated with a novel Clade I sublineage Authors: Leandre Murhula Masirika1,2, Jean Claude...
View ArticleSpecial Issue of Viruses Journal: Challenges in HIV Diversity
Dear Colleagues, Viruses invites the submission of original research and review articles to this Special Issue, covering challenges in HIV diversity. The articles can cover any level of diversity,...
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