Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil:...
Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil: a technical briefing Luiz G P de Almeida¹, Alessandra P Lamarca¹, Ronaldo da Silva F Jr¹, Liliane Cavalcante¹, Alexandra L...
View ArticleNovel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a...
C.37: Novel lineage expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N) Pedro E....
View ArticleSpread of endemic SARS-CoV-2 lineages in Russia
Spread of endemic SARS-CoV-2 lineages in Russia Galya V. Klink1, Ksenia R. Safina2, Sofya K. Garushyants1, Mikhail Moldovan2, Elena Nabieva2, CoRGI (Coronavirus Russian Genetic Initiative) consortium,...
View ArticleEarly appearance of two distinct genomic lineages of SARS-CoV-2 in different...
Early appearance of two distinct genomic lineages of SARS-CoV-2 in different Wuhan wildlife markets suggests SARS-CoV-2 has a natural origin Robert F. Garry1,2 1Department of Microbiology and...
View ArticleStepwise evolution and exceptional conservation of ORF1a/b overlap
Stepwise evolution and exceptional conservation of ORF1a/b overlap Han Mei and Anton Nekrutenko Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park,...
View ArticleEmergence of SARS-CoV-2 lineage A.27 in Germany, expressing viral spike...
Emergence of SARS-CoV-2 lineage A.27 in Germany, expressing viral spike proteins with several amino acid replacements of interest, including L18F, L452R, and N501Y in the absence of D614G Sébastien...
View ArticleIdentification of SARS-CoV-2 P.1-related lineages in Brazil provides new...
Identification of SARS-CoV-2 P.1-related lineages in Brazil provides new insights about the mechanisms of emergence of Variants of Concern Tiago Gräf 1A, Gonzalo Bello 2A, Taina Moreira Martins Venas...
View ArticleDetection of Spike Mutations; D80G, T95I, G142D, △144, N439K, E484K, P681H,...
Detection of Spike Mutations; D80G, T95I, G142D, △144, N439K, E484K, P681H, I1130V, and D1139H, in B.1.1.482 Lineage (AV.1) Samples from South Yorkshire, UK. +Sharon Hsu1,2 and +Matthew D Parker2,3,4,...
View ArticleFirst reported cases of SARS-CoV-2 sub-lineage B.1.617.2 in Brazil: an...
First reported cases of SARS-CoV-2 sub-lineage B.1.617.2 in Brazil: an outbreak in a ship and alert for spread Mirleide Cordeiro dos Santos 1, Edivaldo Costa Sousa Júnior 1, Jessylene de Almeida...
View ArticleRASCL: Rapid assessment of SARS-COV-2 clades enabled through molecular...
RASCL: Rapid assessment of SARS-COV-2 clades enabled through molecular sequence analysis and its application to B.1.617.1 and B.1.617.2 Alexander G Lucaci1, Jordan D Zehr1, Stephen D Shank1, Dave...
View ArticleRecent evolution and international transmission of SARS-CoV-2 clade 19B...
Authors: Carmen Lia Murall[1], Fatima Mostefai[2,3], Jean-Christophe Grenier[3], Raphaël Poujol[3], Julie Hussin[3,4], Sandrine Moreira[5], B. Jesse Shapiro[1], on behalf of the CoVSeQ consortium[6]...
View ArticleGenomic Gymnastics in the Nucleocapsid Gene of SARS-CoV-2 During Transmission...
Genomic Gymnastics in the Nucleocapsid Gene of SARS-CoV-2 During Transmission in Humans: Transposition of ACGAAC and Creation of the novel N2 Gene William R. Gallaher Mockingbird Nature Research...
View ArticleDetection of potential new SARS-CoV-2 Gamma-related lineage in Tocantins
bioRxiv – 30 Jun 21 Detection of potential new SARS-CoV-2 Gamma-related lineage in Tocantins... After more than a year of the pandemic situation of COVID-19, the United Kingdom (UK), South Africa, and...
View ArticleEmergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying...
Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying Spike mutations 𝚫141-144, N679K or P681H during persistent viral circulation in Amazonas, Brazil Felipe Naveca 1, Valdinete...
View ArticleViral infection and transmission in a large well-traced outbreak caused by...
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant Baisheng Li1,2#, Aiping Deng1,2#, Kuibiao Li3#, Yao Hu1,2#, Zhencui Li1,2#, Qianling Xiong1,2,4,...
View ArticleHigh rate of mutational events in SARS-CoV-2 genomes across Brazilian
bioRxiv – 12 Jul 21 High rate of mutational events in SARS-CoV-2 genomes across Brazilian... Brazil has been considered as one of the emerging epicenters of the coronavirus pandemic in 2021,...
View ArticleEmergence of a putative novel SARS-CoV-2 P.X lineage harboring N234P and...
https://www.researchsquare.com/article/rs-689012/v1 Manuscript8000×4500 1.15 MB 1 post - 1 participant Read full topic
View ArticleEmergence and spread of a B.1.1.28-derived lineage with Q675H and Q677H Spike...
Natalia Rego1*, Cecilia Salazar2*, Mercedes Paz3*, Alicia Costábile3,4,5*, Alvaro Fajardo4,5, Ignacio Ferrés2, Paula Perbolianachis4,5, Tamara Fernández-Calero1, Veronica Noya6, Rodrigo Arce4,5,...
View ArticleReal-time genomic surveillance during the 2021 re-emergence of the yellow...
bioRxiv – 19 Jul 21 Real-time genomic surveillance during the 2021 re-emergence of the yellow... The yellow fever virus (YFV) re-emergence in Rio Grande do Sul, Brazil, raised big concerns and led the...
View ArticleGenomic surveillance tracks the first communitary outbreak of Delta...
Alessandra P Lamarca¹, Luiz G P de Almeida¹, Ronaldo da Silva Francisco Junior¹, Liliane Cavalcante¹, Douglas Terra Machado¹, Otávio Brustolini¹, Alexandra L Gerber¹, Ana Paula de C Guimarães¹, Cintia...
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