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Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil:...

Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil: a technical briefing Luiz G P de Almeida¹, Alessandra P Lamarca¹, Ronaldo da Silva F Jr¹, Liliane Cavalcante¹, Alexandra L...

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Novel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a...

C.37: Novel lineage expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N) Pedro E....

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Spread of endemic SARS-CoV-2 lineages in Russia

Spread of endemic SARS-CoV-2 lineages in Russia Galya V. Klink1, Ksenia R. Safina2, Sofya K. Garushyants1, Mikhail Moldovan2, Elena Nabieva2, CoRGI (Coronavirus Russian Genetic Initiative) consortium,...

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Early appearance of two distinct genomic lineages of SARS-CoV-2 in different...

Early appearance of two distinct genomic lineages of SARS-CoV-2 in different Wuhan wildlife markets suggests SARS-CoV-2 has a natural origin Robert F. Garry1,2 1Department of Microbiology and...

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Stepwise evolution and exceptional conservation of ORF1a/b overlap

Stepwise evolution and exceptional conservation of ORF1a/b overlap Han Mei and Anton Nekrutenko Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park,...

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Emergence of SARS-CoV-2 lineage A.27 in Germany, expressing viral spike...

Emergence of SARS-CoV-2 lineage A.27 in Germany, expressing viral spike proteins with several amino acid replacements of interest, including L18F, L452R, and N501Y in the absence of D614G Sébastien...

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Identification of SARS-CoV-2 P.1-related lineages in Brazil provides new...

Identification of SARS-CoV-2 P.1-related lineages in Brazil provides new insights about the mechanisms of emergence of Variants of Concern Tiago Gräf 1A, Gonzalo Bello 2A, Taina Moreira Martins Venas...

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Detection of Spike Mutations; D80G, T95I, G142D, △144, N439K, E484K, P681H,...

Detection of Spike Mutations; D80G, T95I, G142D, △144, N439K, E484K, P681H, I1130V, and D1139H, in B.1.1.482 Lineage (AV.1) Samples from South Yorkshire, UK. +Sharon Hsu1,2 and +Matthew D Parker2,3,4,...

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First reported cases of SARS-CoV-2 sub-lineage B.1.617.2 in Brazil: an...

First reported cases of SARS-CoV-2 sub-lineage B.1.617.2 in Brazil: an outbreak in a ship and alert for spread Mirleide Cordeiro dos Santos 1, Edivaldo Costa Sousa Júnior 1, Jessylene de Almeida...

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RASCL: Rapid assessment of SARS-COV-2 clades enabled through molecular...

RASCL: Rapid assessment of SARS-COV-2 clades enabled through molecular sequence analysis and its application to B.1.617.1 and B.1.617.2 Alexander G Lucaci1, Jordan D Zehr1, Stephen D Shank1, Dave...

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Recent evolution and international transmission of SARS-CoV-2 clade 19B...

Authors: Carmen Lia Murall[1], Fatima Mostefai[2,3], Jean-Christophe Grenier[3], Raphaël Poujol[3], Julie Hussin[3,4], Sandrine Moreira[5], B. Jesse Shapiro[1], on behalf of the CoVSeQ consortium[6]...

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Genomic Gymnastics in the Nucleocapsid Gene of SARS-CoV-2 During Transmission...

Genomic Gymnastics in the Nucleocapsid Gene of SARS-CoV-2 During Transmission in Humans: Transposition of ACGAAC and Creation of the novel N2 Gene William R. Gallaher Mockingbird Nature Research...

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Detection of potential new SARS-CoV-2 Gamma-related lineage in Tocantins

bioRxiv – 30 Jun 21 Detection of potential new SARS-CoV-2 Gamma-related lineage in Tocantins... After more than a year of the pandemic situation of COVID-19, the United Kingdom (UK), South Africa, and...

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Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying...

Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying Spike mutations 𝚫141-144, N679K or P681H during persistent viral circulation in Amazonas, Brazil Felipe Naveca 1, Valdinete...

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Viral infection and transmission in a large well-traced outbreak caused by...

Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant Baisheng Li1,2#, Aiping Deng1,2#, Kuibiao Li3#, Yao Hu1,2#, Zhencui Li1,2#, Qianling Xiong1,2,4,...

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High rate of mutational events in SARS-CoV-2 genomes across Brazilian

bioRxiv – 12 Jul 21 High rate of mutational events in SARS-CoV-2 genomes across Brazilian... Brazil has been considered as one of the emerging epicenters of the coronavirus pandemic in 2021,...

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Emergence of a putative novel SARS-CoV-2 P.X lineage harboring N234P and...

https://www.researchsquare.com/article/rs-689012/v1 Manuscript8000×4500 1.15 MB 1 post - 1 participant Read full topic

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Emergence and spread of a B.1.1.28-derived lineage with Q675H and Q677H Spike...

Natalia Rego1*, Cecilia Salazar2*, Mercedes Paz3*, Alicia Costábile3,4,5*, Alvaro Fajardo4,5, Ignacio Ferrés2, Paula Perbolianachis4,5, Tamara Fernández-Calero1, Veronica Noya6, Rodrigo Arce4,5,...

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Real-time genomic surveillance during the 2021 re-emergence of the yellow...

bioRxiv – 19 Jul 21 Real-time genomic surveillance during the 2021 re-emergence of the yellow... The yellow fever virus (YFV) re-emergence in Rio Grande do Sul, Brazil, raised big concerns and led the...

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Genomic surveillance tracks the first communitary outbreak of Delta...

Alessandra P Lamarca¹, Luiz G P de Almeida¹, Ronaldo da Silva Francisco Junior¹, Liliane Cavalcante¹, Douglas Terra Machado¹, Otávio Brustolini¹, Alexandra L Gerber¹, Ana Paula de C Guimarães¹, Cintia...

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